Parameter estimation for Boolean models of biological networks

Patterns of subnet usage reveal distinct scales of regulation in the transcriptional regulatory network of Escherichia coli

Perturbation waves in proteins and protein networks: Applications of percolation and game theories in signaling and drug design

Physical approaches to the dynamics of genetic circuits: A tutorial

Piecewise linear models of chemical reaction networks

Positional distribution of human transcription factor binding sites

Positional information, in bits

Positive feedback and noise activate the stringent response regulator Rel in mycobacteria

Post-transcriptional regulation of noise in protein distributions during gene expression

Power laws in biological networks

ppiTrim: Constructing non-redundant and up-to-date interactomes

Predicting effects of structural stress in a genome-reduced model bacterial metabolism

Predicting essential components of signal transduction networks: a dynamic model of guard cell abscisic acid signaling

Predicting synthetic rescues in metabolic networks

Prediction of lethal and synthetically lethal knock-outs in regulatory networks

Principles in the Evolution of Metabolic Networks

Principles of microRNA regulation of a human cellular signaling network

Probabilistic methods for predicting protein functions in protein-protein interaction networks

Probability Models for Degree Distributions of Protein Interaction Networks

Propagation of fluctuations in interaction networks governed by the law of mass action