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A Coarse-Grained Biophysical Model of E. coli and Its Application to Perturbation of the rRNA Operon Copy Number

Biology – Quantitative Biology – Molecular Networks
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A comparative evolutionary study of transcription networks

Biology – Quantitative Biology – Molecular Networks
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A computational analysis of the dynamic roles of talin, Dok1, and PIPKI for integrin activation

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A computational systems biology study of the lambda-lac mutants

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A core genetic module : the Mixed Feedback Loop

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A dichotomy for a class of cyclic delay systems

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A Dimension Reduction Method for Inferring Biochemical Networks

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A discrete inhomogeneous model for the yeast cell cycle

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A Dynamical Model Reveals Gene Co-Localizations in Nucleus

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A fast and efficient gene-network reconstruction method from multiple over-expression experiments

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A feedback approach to bifurcation analysis in biochemical networks with many parameters

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A generic mechanism for adaptive growth rate regulation

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A Generic Rate Equation for modeling Enzymatic Reactions under Living Conditions

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A linear elimination framework

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A machine learning pipeline for discriminant pathways identification

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A Minimal Model of Signaling Network Elucidates Cell-to-Cell Stochastic Variability in Apoptosis

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A Model of Sequential Branching in Hierarchical Cell Fate Determination

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A modified Next Reaction Method for simulating chemical systems with time dependent propensities and delays

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A modular synthetic device to calibrate promoters

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A new homeostatic model of the T cell system

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