Deciphering Network Community Structure by Surprise

Decomposition of Complex Reaction Networks into Reactons

Deformed Toric Ideal Constraints on Stoichiometric Networks

Delayed coupling theory of vertebrate segmentation

Density-based modeling and identification of biochemical networks in cell populations

Design of experiments and biochemical network inference

Designing sequential transcription logic: a simple genetic circuit for conditional memory

Detection of the dominant direction of information flow in densely interconnected regulatory networks

Determining the stability of genetic switches: explicitly accounting for mRNA noise

Deterministic and Stochastic Simulations of Simple Genetic Circuits

Deterministic characterization of stochastic genetic circuits

Differential and graphical approaches to multistability theory for chemical reaction networks

Differential gene expression in Bacillus subtilis

Diffusion and interfaces in pattern formation

Diffusion of transcription factors can drastically enhance the noise in gene expression

Diffusion, dimensionality and noise in transcriptional regulation

Directionality is an inherent property of biochemical networks

Discovery and analysis of biochemical subnetwork hierarchies

Discriminative Topological Features Reveal Biological Network Mechanisms

Disordered proteins and network disorder in network descriptions of protein structure, dynamics and function. Hypotheses and a comprehensive review