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PIPER: An FFT-based Protein Docking Program with Pairwise Potentials

Biology – Quantitative Biology – Biomolecules
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Planet RB: a personal contribution to a proteomic map of human retinoblastoma protein

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Polymorphic Dynamics of Microtubules

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Positive and negative design in stability and thermal adaptation of natural proteins

Biology – Quantitative Biology – Biomolecules
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Potential for modulation of the hydrophobic effect inside chaperonins

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Potential function of simplified protein models for discriminating native proteins from decoys: Combining contact interaction and local sequence-dependent geometry

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Potentials of Mean Force for Protein Structure Prediction Vindicated, Formalized and Generalized

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Prebiotic Synthesis of Protobiopolymers Under Alkaline Ocean Conditions

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Predicting Knot or Catenane Type of Site-Specific Recombination Products

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Predicting Residue-wise Contact Orders of Native Protein Structure from Amino Acid Sequence

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Predicting Secondary Structures, Contact Numbers, and Residue-wise Contact Orders of Native Protein Structure from Amino Acid Sequence by Critical Random Networks

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Predicting Transcription Factor Specificity with All-Atom Models

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Prediction of RNA pseudoknots by Monte Carlo simulations

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Prediction of RNA-RNA interaction structure by centroids in the Boltzmann ensemble

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Prediction of site-specific amino acid distributions and limits of divergent evolutionary changes in protein sequences

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Prediction of transcription factor binding to DNA using rule induction methods

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Presence of pKa Perturbations Among Homeodomain Residues Facilitates DNA Binding

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Preservation of organic matter in the STONE 6 artificial meteorite experiment

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Probability distribution of bubble lengths in DNA

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Probing Noise in Gene Expression and Protein Production

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