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A base pairing model of duplex formation I: Watson-Crick pairing geometries

Biology – Quantitative Biology – Biomolecules
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A BIMA Array Search for Biomolecules in Comet Hale-Bopp(C/1995 O1)

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A Chemical Kinetic Model of Transcriptional Elongation

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A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction

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A complex adaptive systems approach to the kinetic folding of RNA

Biology – Quantitative Biology – Biomolecules
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A composite model for DNA torsion dynamics

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A Condensation-Ordering Mechanism in Nanoparticle-Catalyzed Peptide Aggregation

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A Constructive Approach to Gene Expression Dynamics

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A contact-waiting-time metric and RNA folding rates

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A double-deletion method to quantifying incremental binding energies in proteins from experiment. Example of a destabilizing hydrogen bonding pair

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A Finite Element framework for computation of protein normal modes and mechanical response

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A First Principles Density-Functional Calculation of the Electronic and Vibrational Structure of the Key Melanin Monomers

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A first-principles model of early evolution: Emergence of gene families, species and preferred protein folds

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A folding inhibitor of the HIV-1 Protease

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A Generalized Theory of DNA Looping and Cyclization

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A global view of drug-therapy interactions

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A growth model for RNA secondary structures

Biology – Quantitative Biology – Biomolecules
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A helicoidal transfer matrix model for inhomogeneous DNA melting

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A Hydrophobic Gate in an Ion Channel: The Closed State of the Nicotinic Acetylcholine Receptor

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A Kinetic Model Describing the Processivity of Myosin-V

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