Physics of thick polymers

Details Physics of thick polymers Physics of thick polymers

2005-08-19

arxiv.org/abs/cond-mat/0508446v1

J. Pol. Sci. B 43, 650-679 (2005)

Physics

Condensed Matter

Soft Condensed Matter

41 pages, 20 figures. Accepted for publication in J. Pol. Sci. B

Scientific paper

We present the results of analytic calculations and numerical simulations of the behaviour of a new class of chain molecules which we call thick polymers. The concept of the thickness of such a polymer, viewed as a tube, is encapsulated by a special three body interaction and impacts on the behaviour both locally and non-locally. When thick polymers undergo compaction due to an attractive self-interaction, we find a new type of phase transition between a compact phase and a swollen phase at zero temperature on increasing the thickness. In the vicinity of this transition, short tubes form space filling helices and sheets as observed in protein native state structures. Upon increasing the chain length, or the number of chains, we numerically find a crossover from secondary structure motifs to a quite distinct class of structures akin to the semi-crystalline phase of polymers or amyloid fibers in polypeptides.

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