Physics – Condensed Matter – Soft Condensed Matter
Scientific paper
2009-06-24
Phys. Rev. E 81 (2010) 051907
Physics
Condensed Matter
Soft Condensed Matter
4 pages, 6 figures
Scientific paper
We employ simulations of model proteins to study folding on rugged energy landscapes. We construct ``first-passage'' networks as the system transitions from unfolded to native states. The nodes and bonds in these networks correspond to basins and transitions between them in the energy landscape. We find power-laws between the folding time and number of nodes and bonds. We show that these scalings are determined by the fractal properties of first-passage networks. Reliable folding is possible in systems with rugged energy landscapes because first passage networks have small fractal dimension.
Blawzdziewicz Jerzy
Lois Gregg
O'Hern Corey S.
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