Physics – Condensed Matter – Soft Condensed Matter
Scientific paper
2005-12-13
Physics
Condensed Matter
Soft Condensed Matter
4 pages, 3 figures
Scientific paper
The effect of different move sets on the folding kinetics of the Monte Carlo simulations is analysed based on the conformation-network and the temperature-dependent folding kinetics. A new scheme of implementing Metropolis algorithm is given. The new method is shown to satisfy the detailed balance and converge efficiently towards thermal equilibrium. A new quantity, employed from the continuous time Monte Carlo method, is introduced to identify effectively the kinetic traps of foldings.
Chou Yen-Liang
Huang Ming-Chang
Liaw Tsong-Ming
Luo Yu-Pin
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