Effects of Eye-phase in DNA unzipping

Details Effects of Eye-phase in DNA unzipping Effects of Eye-phase in DNA unzipping

2007-04-24

arxiv.org/abs/0704.3175v1

Phys. Rev. E 73, 050903(R) (2006)

Physics

Condensed Matter

Soft Condensed Matter

RevTeX v4, 9 pages with 7 eps figures

Scientific paper

The onset of an "eye-phase" and its role during the DNA unzipping is studied when a force is applied to the interior of the chain. The directionality of the hydrogen bond introduced here shows oscillations in force-extension curve similar to a "saw-tooth" kind of oscillations seen in the protein unfolding experiments. The effects of intermediates (hairpins) and stacking energies on the melting profile have also been discussed.

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