Effective Breather Trapping Mechanism for DNA Transcription

Physics – Condensed Matter

Scientific paper

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old paper, add source files, 17 pages, 16 eps files

Scientific paper

10.1103/PhysRevE.53.1011

Collective coordinate and direct numerical integration methods are applied to
the analysis of a one-dimensional DNA model. A modification of the coupling
constant in an extended region is found to be less selective towards the
breather it can trap than an isolated impurity. Therefore it provides a
possible physical mechanism for the effect of an enzyme on DNA transcription.

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