Design Equation: A Novel Approach to Heteropolymer Design

Details Design Equation: A Novel Approach to Heteropolymer Design Design Equation: A Novel Approach to Heteropolymer Design

1998-07-24

arxiv.org/abs/cond-mat/9807326v1

J. Phys. Soc. Japan, Vol.67, Nov. 1998, 3985-3990

Physics

Condensed Matter

Disordered Systems and Neural Networks

7 pages, 3 tables, 1 figures, uses jpsj.sty, jpsjbs1.sty, epsf.sty, Submitted to J. Phys. Soc. Jpn

Scientific paper

10.1143/JPSJ.67.3985

A novel approach to heteropolymer design is proposed. It is based on the criterion by Kurosky and Deutsch, with which the probability of a target conformation in a conformation space is maximized at low but finite temperature. The key feature of the proposed approach is the use of soft spins (fuzzy monomers) that leads to a design equation, which is an analog of the Boltzmann machine learning equation in the design problem. We implement an algorithm based on the design equation for the generalized HP model on the 3x3x3 cubic lattice and check its performance.

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