Chemotaxis When Bacteria Remember: Drift versus Diffusion

Details Chemotaxis When Bacteria Remember: Drift versus Diffusion Chemotaxis When Bacteria Remember: Drift versus Diffusion

2011-03-28

arxiv.org/abs/1103.5355v2

PLoS Comp. Biol. volume:7 Issue:12 e1002283 (2011)

Physics

Condensed Matter

Statistical Mechanics

Revised version, journal reference added

Scientific paper

10.1371/journal.pcbi.1002283

{\sl Escherichia coli} ({\sl E. coli}) bacteria govern their trajectories by switching between running and tumbling modes as a function of the nutrient concentration they experienced in the past. At short time one observes a drift of the bacterial population, while at long time one observes accumulation in high-nutrient regions. Recent work has viewed chemotaxis as a compromise between drift toward favorable regions and accumulation in favorable regions. A number of earlier studies assume that a bacterium resets its memory at tumbles -- a fact not borne out by experiment -- and make use of approximate coarse-grained descriptions. Here, we revisit the problem of chemotaxis without resorting to any memory resets. We find that when bacteria respond to the environment in a non-adaptive manner, chemotaxis is generally dominated by diffusion, whereas when bacteria respond in an adaptive manner, chemotaxis is dominated by a bias in the motion. In the adaptive case, favorable drift occurs together with favorable accumulation. We derive our results from detailed simulations and a variety of analytical arguments. In particular, we introduce a new coarse-grained description of chemotaxis as biased diffusion, and we discuss the way it departs from older coarse-grained descriptions.

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