Physics – Condensed Matter – Statistical Mechanics
Scientific paper
2010-10-29
Physics
Condensed Matter
Statistical Mechanics
3 figures
Scientific paper
A highly efficient formulation of moment equations for stochastic reaction networks is introduced. It is based on a set of binomial moments that capture the combinatorics of the reaction processes. The resulting set of equations can be easily runcated to include moments up to any desired order. The number of equations is dramatically reduced compared to the master equation. This formulation enables the simulation of complex reaction networks, involving a large number of reactive species much beyond the feasibility limit of any existing method. It provides an equation-based paradigm to the analysis of stochastic networks, complementing the commonly used Monte Carlo simulations.
Barzel Baruch
Biham Ofer
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