Amino acid classes and the protein folding problem

Details Amino acid classes and the protein folding problem Amino acid classes and the protein folding problem

2000-10-18

arxiv.org/abs/cond-mat/0010244v1

Physics

Condensed Matter

Statistical Mechanics

REVTeX, 11 pages, 4 figures, To appear in J. Chem. Phys

Scientific paper

10.1063/1.1333025

We present and implement a distance-based clustering of amino acids within the framework of a statistically derived interaction matrix and show that the resulting groups faithfully reproduce, for well-designed sequences, thermodynamic stability in and kinetic accessibility to the native state. A simple interpretation of the groups is obtained by eigenanalysis of the interaction matrix.

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