A Study of Sequence Distribution of a Painted Globule as a Model for Proteins with Good Folding Properties

Details A Study of Sequence Distribution of a Painted Globule as a Model for Proteins with Good Folding Properties A Study of Sequence Distribution of a Painted Globule as a Model for Proteins with Good Folding Properties

2001-04-23

arxiv.org/abs/cond-mat/0104440v1

Il Nuovo Cimento. Vol. 20D, No 12bis, pp. 2383-2391 (1998)

Physics

Condensed Matter

Soft Condensed Matter

11 pages incl. 6 PS figures. Paper presented at the International Conference on Morphology and Kinetics of Phase Separating Co

Scientific paper

In this paper we present a method to study the folding structure of a simple model consisting of two kinds of monomers, hydrophobic and hydrophilic. This method has three main steps: an efficient simulation method to bring an open sequence of homopolymer to a folded state, the application of a painting method called (regular hull) to the folded globule and the refolding process of the obtained copolymer sequence. This study allows us to suggest a theoretical function of disorder distribution for copolymer sequences that give rise to a compacted and well micro-phase separated globule.

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