Physics – Condensed Matter – Statistical Mechanics
Scientific paper
2007-11-21
Physics
Condensed Matter
Statistical Mechanics
7 pages, 4 figures. Article submitted for the proceedings of the Conference on Computational Physics, Brussels 2007
Scientific paper
10.1016/j.cpc.2008.01.023
Due to the time scale problem, rare events are not accessible by straight forward molecular dynamics. The presence of multiple reaction channels complicates the problem even further. The feasibility of the standard free energy based methods relies strongly on the success in finding a proper reaction coordinate. This can be very difficult task in high-dimensional complex systems and even more if several distinct reaction channels exist. Moreover, even if a proper reaction coordinate can be found, ergodic sampling will be a challenge. In this article, we discuss the recent advancements of path sampling methods to tackle this problem. We argue why the path sampling methods, via the transition interface sampling technique, is less sensitive to the choice of reaction coordinate. Moreover, we review a new algorithm, parallel path swapping, that can dramatically improve the ergodic sampling of trajectories for the multiple reaction channel systems.
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