Comparative statistical analysis of bacteria genomes in "word" context

Details Comparative statistical analysis of bacteria genomes in "word" context Comparative statistical analysis of bacteria genomes in "word" context

2000-10-17

arxiv.org/abs/cond-mat/0010231v1

Physics

Condensed Matter

14 pages, 3 figures, submitted to Physica A

Scientific paper

10.1016/S0378-4371(00)00549-5

Statistical analysis of bacteria genomes texts has been performed on the basis of 20 complete genomes origin from Genebank. It has been revealed that the word ranked distributions are quite well approximated by logarithmic law. Results obtained in the absent words investigation show the considerably nonrandom character of DNA texts. In character of autocorrelation function behavior in several genomes period 3 oscillations were found. Short range autocorrelations are present in short ($n=3$) words and practically absent in longer words.

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