Study of a model for the folding of a small protein

Details Study of a model for the folding of a small protein Study of a model for the folding of a small protein

2005-03-22

arxiv.org/abs/q-bio/0503034v2

Biology

Quantitative Biology

Biomolecules

typos corrected, one figure added

Scientific paper

10.1088/0953-8984/18/24/009

We describe the results obtained from an improved model for protein folding. We find that a good agreement with the native structure of a 46 residue long, five-letter protein segment is obtained by carefully tuning the parameters of the self-avoiding energy. In particular we find an improved free-energy profile. We also compare the efficiency of the multidimensional replica exchange method with the widely used parallel tempering.

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