Self-organizing Approach for Automated Gene Identification in Whole Genomes

Details Self-organizing Approach for Automated Gene Identification in Whole Genomes Self-organizing Approach for Automated Gene Identification in Whole Genomes

2001-08-10

arxiv.org/abs/physics/0108016v1

Physics

Biological Physics

LaTex, RevTex4, 4 pages, 6 figures

Scientific paper

An approach based on using the idea of distinguished coding phase in explicit form for identification of protein-coding regions (exons) in whole genome has been proposed. For several genomes an optimal window length for averaging GC-content function and calculating codon frequencies has been found. Self-training procedure based on clustering in multidimensional space of triplet frequencies is proposed. For visualization of data in the space of triplet requiencies method of elastic maps was applied.

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