Role-similarity based functional prediction in networked systems: Application to the yeast proteome

Details Role-similarity based functional prediction in networked systems: Application to the yeast proteome Role-similarity based functional prediction in networked systems: Application to the yeast proteome

2005-03-06

arxiv.org/abs/q-bio/0503010v1

J. Roy. Soc. Interface 2, 327 (2005)

Biology

Quantitative Biology

Molecular Networks

Scientific paper

10.1098/rsif.2005.0046

We propose a general method to predict functions of vertices where: 1. The wiring of the network is somehow related to the vertex functionality. 2. A fraction of the vertices are functionally classified. The method is influenced by role-similarity measures of social network analysis. The two versions of our prediction scheme is tested on model networks were the functions of the vertices are designed to match their network surroundings. We also apply these methods to the proteome of the yeast Saccharomyces cerevisiae and find the results compatible with more specialized methods.

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