Biology – Quantitative Biology – Biomolecules
Scientific paper
2005-02-13
Phys. Rev. Lett. v.96:028105(2006)
Biology
Quantitative Biology
Biomolecules
revised manuscript: 4.2 pages, 3 figures
Scientific paper
10.1103/PhysRevLett.96.028105
We extend replica exchange simulation in two ways, and apply our approaches to biomolecules. The first generalization permits exchange simulation between models of differing resolution -- i.e., between detailed and coarse-grained models. Such ``resolution exchange'' can be applied to molecular systems or spin systems. The second extension is to ``pseudo-exchange'' simulations, which require little CPU usage for most levels of the exchange ladder and also substantially reduces the need for overlap between levels. Pseudo exchanges can be used in either replica or resolution exchange simulations. We perform efficient, converged simulations of a 50-atom peptide to illustrate the new approaches.
Lyman Edward
Ytreberg Marty F.
Zuckerman Daniel M.
No associations
LandOfFree
Resolution exchange simulation does not yet have a rating. At this time, there are no reviews or comments for this scientific paper.
If you have personal experience with Resolution exchange simulation, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Resolution exchange simulation will most certainly appreciate the feedback.
Profile ID: LFWR-SCP-O-674445