Noise and critical phenomena in biochemical signaling cycles at small molecule numbers

Details Noise and critical phenomena in biochemical signaling cycles at small molecule numbers Noise and critical phenomena in biochemical signaling cycles at small molecule numbers

2009-04-06

arxiv.org/abs/0904.0947v4

Biology

Quantitative Biology

Molecular Networks

11 pages, 8 figures, needs style files: revTex, chemarrow

Scientific paper

Biochemical reaction networks in living cells usually involve reversible covalent modification of signaling molecules, such as protein phosphorylation. Under conditions of small molecule numbers, as is frequently the case in living cells, mass action theory fails to describe the dynamics of such systems. Instead, the biochemical reactions must be treated as stochastic processes that intrinsically generate concentration fluctuations of the chemicals. We investigate the stochastic reaction kinetics of covalent modification cycles (CMCs) by analytical modeling and numerically exact Monte-Carlo simulation of the temporally fluctuating concentration. Depending on the parameter regime, we find for the probability density of the concentration qualitatively distinct classes of distribution functions, including power law distributions with a fractional and tunable exponent. These findings challenge the traditional view of biochemical control networks as deterministic computational systems and suggest that CMCs in cells can function as versatile and tunable noise generators.

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