Linear noise approximation of noise-induced oscillation in NF-κB signaling network

Details Linear noise approximation of noise-induced oscillation in NF-κB signaling network Linear noise approximation of noise-induced oscillation in NF-κB signaling network

2010-10-08

arxiv.org/abs/1010.1743v1

Biology

Quantitative Biology

Molecular Networks

19 pages, 5 figures

Scientific paper

NF-{\kappa}B, one of key regulators of inflammation, apoptosis, and differentiation, was found to have noisy oscillatory shuttling between the nucleus and the cytoplasm in single cells when cells are stimulated by cytokine TNF{\alpha}. We present the analytical analysis which uncovers the underlying physical mechanisms of this spectacular noise-induced transition in biological networks. Starting with the master equation describing both signaling and transcription events in NF-{\kappa}B signaling network, we derived the macroscopic and the Fokker-Planck equations by using van Kampen's sysem size expansion. Using the noise-induced oscillatory signatures present in the power spectrum, we constructed the two-dimensional phase diagram where the noise-induced oscillation emerges in the dynamically stable parameter space.

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