Physics – Computational Physics
Scientific paper
2009-01-29
Physics
Computational Physics
15 pages, 13 figures, 1 table
Scientific paper
We present a new method for isothermal rigid body simulations using the quaternion representation and Langevin dynamics. It can be combined with the traditional Langevin or gradient (Brownian) dynamics for the translational degrees of freedom to correctly sample the NVT distribution in a simulation of rigid molecules. We propose simple, quasi-symplectic second-order numerical integrators and test their performance on the TIP4P model of water. We also investigate the optimal choice of thermostat parameters.
Davidchack Ruslan L.
Handel Richard
Tretyakov M. V.
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