Functional State Dependence of Picosecond Protein Dynamics

Details Functional State Dependence of Picosecond Protein Dynamics Functional State Dependence of Picosecond Protein Dynamics

2011-05-23

arxiv.org/abs/1105.4425v1

Biology

Quantitative Biology

Biomolecules

4 main pages, 3 figures, 1 table, 2 supplemental tables

Scientific paper

We examine temperature dependent picosecond dynamics as a function of structure and function for lysozyme and cytochrome c using temperature dependent terahertz permittivity measurements. A double Arrhenius temperature dependence with activation energies E1 ~ 0.1 kJ/mol and E2 ~10 kJ/mol fits the native state response. The higher activation energy is consistent with the so-called protein dynamical transition associated with beta relaxations at the solvent-protein interface. The lower activation energy is consistent with correlated structural motions. When the structure is removed by denaturing the lower activation energy process is no longer present. Additionally the lower activation energy process is diminished with ligand binding, but not for changes in internal oxidation state. We suggest that the lower energy activation process is associated with collective structural motions that are no longer accessible with denaturing or binding.

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