Functional modes of proteins are among the most robust ones

Details Functional modes of proteins are among the most robust ones Functional modes of proteins are among the most robust ones

2005-09-15

arxiv.org/abs/q-bio/0509020v1

Phys. Rev. Letters vol. 96 078104 (2006)

Biology

Quantitative Biology

Biomolecules

4 pages, 5 figures

Scientific paper

10.1103/PhysRevLett.96.078104

It is shown that a small subset of modes which are likely to be involved in protein functional motions of large amplitude can be determined by retaining the most robust normal modes obtained using different protein models. This result should prove helpful in the context of several applications proposed recently, like for solving difficult molecular replacement problems or for fitting atomic structures into low-resolution electron density maps. Moreover, it may also pave the way for the development of methods allowing to predict such motions accurately.

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