Field Theory of the RNA Freezing Transition

Details Field Theory of the RNA Freezing Transition Field Theory of the RNA Freezing Transition

2009-06-08

arxiv.org/abs/0906.1472v2

J. Stat. Mech. (2009) P10019

Biology

Quantitative Biology

Biomolecules

96 pages, 188 figures. v2: minor corrections

Scientific paper

Folding of RNA is subject to a competition between entropy, relevant at high temperatures, and the random, or random looking, sequence, determining the low- temperature phase. It is known from numerical simulations that for random as well as biological sequences, high- and low-temperature phases are different, e.g. the exponent rho describing the pairing probability between two bases is rho = 3/2 in the high-temperature phase, and approximatively 4/3 in the low-temperature (glass) phase. Here, we present, for random sequences, a field theory of the phase transition separating high- and low-temperature phases. We establish the existence of the latter by showing that the underlying theory is renormalizable to all orders in perturbation theory. We test this result via an explicit 2-loop calculation, which yields rho approximatively 1.36 at the transition, as well as diverse other critical exponents, including the response to an applied external force (denaturation transition).

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