Biology – Quantitative Biology – Molecular Networks
Scientific paper
2011-04-19
Biology
Quantitative Biology
Molecular Networks
Accepted for publication in PLoS one, in June 2011
Scientific paper
A statistically principled way of conducting weighted network analysis is still lacking. Comparison of different populations of weighted networks is hard because topology is inherently dependent on wiring cost, where cost is defined as the number of edges in an unweighted graph. In this paper, we evaluate the benefits and limitations associated with using cost-integrated topological metrics. Our focus is on comparing populations of weighted undirected graphs using global efficiency. We evaluate different approaches to the comparison of weighted networks that differ in mean association weight. Our key result shows that integrating over cost is equivalent to controlling for any monotonic transformation of the weight set of a weighted graph. That is, when integrating over cost, we eliminate the differences in topology that may be due to a monotonic transformation of the weight set. Our result holds for any unweighted topological measure. Cost-integration is therefore helpful in disentangling differences in cost from differences in topology. By contrast, we show that the use of the weighted version of a topological metric does not constitute a valid approach to this problem. Indeed, we prove that, under mild conditions, the use of the weighted version of global efficiency is equivalent to simply comparing weighted costs. Thus, we recommend the reporting of (i) differences in weighted costs and (ii) differences in cost-integrated topological measures. We demonstrate the application of these techniques in a re-analysis of an fMRI working memory task. Finally, we discuss the limitations of integrating topology over cost, which may pose problems when some weights are zero, when multiplicities exist in the ranks of the weights, and when one expects subtle cost-dependent topological differences, which could be masked by cost-integration.
Bullmore E. T.
Ginestet Cedric E.
Nichols Thomas E.
Simmons Andrew
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