Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions

Details Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions Analysis of Brownian Dynamics Simulations of Reversible Bimolecular Reactions

2010-05-05

arxiv.org/abs/1005.0698v1

Physics

Biological Physics

16 pages, 13 figures, submitted to SIAM Appl Math

Scientific paper

A class of Brownian dynamics algorithms for stochastic reaction-diffusion models which include reversible bimolecular reactions is presented and analyzed. The method is a generalization of the $\lambda$--$\newrho$ model for irreversible bimolecular reactions which was introduced in [arXiv:0903.1298]. The formulae relating the experimentally measurable quantities (reaction rate constants and diffusion constants) with the algorithm parameters are derived. The probability of geminate recombination is also investigated.

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