Two-Domain DNA Strand Displacement

Details Two-Domain DNA Strand Displacement Two-Domain DNA Strand Displacement

2010-06-08

arxiv.org/abs/1006.2993v1

EPTCS 26, 2010, pp. 47-61

Computer Science

Logic in Computer Science

Scientific paper

10.4204/EPTCS.26.5

We investigate the computing power of a restricted class of DNA strand displacement structures: those that are made of double strands with nicks (interruptions) in the top strand. To preserve this structural invariant, we impose restrictions on the single strands they interact with: we consider only two-domain single strands consisting of one toehold domain and one recognition domain. We study fork and join signal-processing gates based on these structures, and we show that these systems are amenable to formalization and to mechanical verification.

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