Nonlinear Sciences – Adaptation and Self-Organizing Systems
Scientific paper
1997-04-09
Computers & Chemistry (special issue), 2:257-272 (1997)
Nonlinear Sciences
Adaptation and Self-Organizing Systems
LaTeX, two figures, postscript is expected to be 46 pages. To appear in the special issue of Computer & Chemistry (1997)
Scientific paper
10.1016/S0097-8485(97)00022-3
The study of correlation structure in the primary sequences of DNA is reviewed. The issues reviewed include: symmetries among 16 base-base correlation functions, accurate estimation of correlation measures, the relationship between $1/f$ and Lorentzian spectra, heterogeneity in DNA sequences, different modeling strategies of the correlation structure of DNA sequences, the difference of correlation structure between coding and non-coding regions (besides the period-3 pattern), and source of broad distribution of domain sizes. Although some of the results remain controversial, a body of work on this topic constitutes a good starting point for future studies.
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