TAXON version 1.1: A simple way to generate uniform and fractionally weighted three-item matrices from various kinds of biological data

Details TAXON version 1.1: A simple way to generate uniform and fractionally weighted three-item matrices from various kinds of biological data TAXON version 1.1: A simple way to generate uniform and fractionally weighted three-item matrices from various kinds of biological data

2012-03-19

arxiv.org/abs/1203.4269v1

Biology

Quantitative Biology

Quantitative Methods

4 pages, 1 figure, 1 Supplement, 3 Supplemental examples

Scientific paper

An open-access program allowing three-item statement matrices to be generated from data such as molecular sequences does not exist so far. The recently developed LisBeth package (ver. 1.0) allows representing hypotheses of homology among taxa or areas directly as rooted trees or as hierarchies; however, this is not a standard matrix-based platform. Here we present "TAXON version 1.1" (TAXON), a program designed for building three-item statement-matrices from binary, additive (ordered) and non-additive (unordered) multistate characters, with both fractional and uniform weighting of the resulted statements.

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