Biology – Quantitative Biology – Quantitative Methods
Scientific paper
2011-01-31
Biology
Quantitative Biology
Quantitative Methods
21 pages, 1 figure, submitted to J. Phys. A
Scientific paper
We generate new mathematical tools with which to quantify the macroscopic topological structure of large directed networks. This is achieved via a statistical mechanical analysis of constrained maximum entropy ensembles of directed random graphs with prescribed joint distributions for in- and outdegrees and prescribed degree-degree correlation functions. We calculate exact and explicit formulae for the leading orders in the system size of the Shannon entropies and complexities of these ensembles, and for information-theoretic distances. The results are applied to data on gene regulation networks.
Coolen Anthony C. C.
Roberts E. S.
Schlitt T.
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