Python Unleashed on Systems Biology

Details Python Unleashed on Systems Biology Python Unleashed on Systems Biology

2007-04-24

arxiv.org/abs/0704.3259v1

Biology

Quantitative Biology

Quantitative Methods

Submitted to special issue of CiSE

Scientific paper

We have built an open-source software system for the modeling of biomolecular reaction networks, SloppyCell, which is written in Python and makes substantial use of third-party libraries for numerics, visualization, and parallel programming. We highlight here some of the powerful features that Python provides that enable SloppyCell to do dynamic code synthesis, symbolic manipulation, and parallel exploration of complex parameter spaces.

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