Origin and evolution of the genetic code: The universal enigma

Details Origin and evolution of the genetic code: The universal enigma Origin and evolution of the genetic code: The universal enigma

2008-07-29

arxiv.org/abs/0807.4749v2

Biology

Quantitative Biology

Genomics

critical review, 24 pages, 4 figures, submitted to IUBMB Life, modified and extended version

Scientific paper

The genetic code is nearly universal, and the arrangement of the codons in the standard codon table is highly non-random. The three main concepts on origin and evolution of the code are the stereochemical theory; the coevolution theory; and the error minimization theory. These theories are not mutually exclusive and are also compatible with the frozen accident hypothesis. Mathematical analysis of the structure and possible evolutionary trajectories of the code shows that it is highly robust to translational error but there is a huge number of more robust codes, so that the standard code potentially could evolve from a random code via a short sequence of codon series reassignments. Thus, much of the evolution that led to the standard code can be interpreted as a combination of frozen accident with selection for translational error minimization although contributions from coevolution of the code with metabolic pathways and/or weak affinities between amino acids and nucleotide triplets cannot be ruled out. However, such scenarios for the code evolution are based on formal schemes whose relevance to the actual primordial evolution is uncertain, so much caution in interpretation is necessary. A real understanding of the code's origin and evolution is likely to be attainable only in conjunction with a credible scenario for the evolution of the coding principle itself and the translation system.

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