`Lassoing' a phylogenetic tree I: Basic properties, shellings, and covers

Details `Lassoing' a phylogenetic tree I: Basic properties, shellings, and covers `Lassoing' a phylogenetic tree I: Basic properties, shellings, and covers

2011-02-01

arxiv.org/abs/1102.0309v3

Biology

Quantitative Biology

Populations and Evolution

Scientific paper

A classical result, fundamental to evolutionary biology, states that an edge-weighted tree $T$ with leaf set $X$, positive edge weights, and no vertices of degree 2 can be uniquely reconstructed from the set of leaf-to-leaf distances between any two elements of $X$. In biology, $X$ corresponds to a set of taxa (e.g. extant species), the tree $T$ describes their phylogenetic relationships, the edges correspond to earlier species evolving for a time until splitting in two or more species by some speciation/bifurcation event, and their length corresponds to the genetic change accumulating over that time in such a species. In this paper, we investigate which subsets of $\binom{X}{2}$ suffice to determine (`lasso') a tree from the leaf-to-leaf distances induced by that tree. The question is particularly topical since reliable estimates of genetic distance - even (if not in particular) by modern mass-sequencing methods - are, in general, available only for certain combinations of taxa.

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