Fully-Functional Static and Dynamic Succinct Trees

Details Fully-Functional Static and Dynamic Succinct Trees Fully-Functional Static and Dynamic Succinct Trees

2009-05-06

arxiv.org/abs/0905.0768v5

Computer Science

Data Structures and Algorithms

Scientific paper

We propose new succinct representations of ordinal trees, which have been studied extensively. It is known that any $n$-node static tree can be represented in $2n + o(n)$ bits and a number of operations on the tree can be supported in constant time under the word-RAM model. However the data structures are complicated and difficult to dynamize. We propose a simple and flexible data structure, called the range min-max tree, that reduces the large number of relevant tree operations considered in the literature to a few primitives that are carried out in constant time on sufficiently small trees. The result is extended to trees of arbitrary size, achieving $2n + O(n /\polylog(n))$ bits of space. The redundancy is significantly lower than any previous proposal. Our data structure builds on the range min-max tree to achieve $2n+O(n/\log n)$ bits of space and $O(\log n)$ time for all the operations. We also propose an improved data structure using $2n+O(n\log\log n/\log n)$ bits and improving the time to the optimal $O(\log n/\log \log n)$ for most operations. Furthermore, we support sophisticated operations that allow attaching and detaching whole subtrees, in time $\Order(\log^{1+\epsilon} n / \log\log n)$. Our techniques are of independent interest. One allows representing dynamic bitmaps and sequences supporting rank/select and indels, within zero-order entropy bounds and optimal time $O(\log n / \log\log n)$ for all operations on bitmaps and polylog-sized alphabets, and $O(\log n \log \sigma / (\log\log n)^2)$ on larger alphabet sizes $\sigma$. This improves upon the best existing bounds for entropy-bounded storage of dynamic sequences, compressed full-text self-indexes, and compressed-space construction of the Burrows-Wheeler transform.

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