Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains

Details Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains

2009-10-20

arxiv.org/abs/0910.3880v1

In Proceedings of the Fifth Workshop on Constraint Based Methods for Bioinformatics (WCB09), 2009, Lisbon

Computer Science

Computational Engineering, Finance, and Science

Published in Proceedings of the Fifth Workshop on Constraint Based Methods for Bioinformatics (WCB09), 2009, 10 pages

Scientific paper

The simulation of a protein's folding process is often done via stochastic local search, which requires a procedure to apply structural changes onto a given conformation. Here, we introduce a constraint-based approach to enumerate lattice protein structures according to k-local moves in arbitrary lattices. Our declarative description is much more flexible for extensions than standard operational formulations. It enables a generic calculation of k-local neighbors in backbone-only and side chain models. We exemplify the procedure using a simple hierarchical folding scheme.

Affiliated with

Also associated with

No associations

Rating

Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains does not yet have a rating. At this time, there are no reviews or comments for this scientific paper.

If you have personal experience with Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and Constraint-based Local Move Definitions for Lattice Protein Models Including Side Chains will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFWR-SCP-O-144795