Computer Science – Information Retrieval
Scientific paper
2010-12-21
Computer Science
Information Retrieval
8 pages, 10 figures
Scientific paper
The Chem2Bio2RDF portal is a Linked Open Data (LOD) portal for systems chemical biology aiming for facilitating drug discovery. It converts around 25 different datasets on genes, compounds, drugs, pathways, side effects, diseases, and MEDLINE/PubMed documents into RDF triples and links them to other LOD bubbles, such as Bio2RDF, LODD and DBPedia. The portal is based on D2R server and provides a SPARQL endpoint, but adds on few unique features like RDF faceted browser, user-friendly SPARQL query generator, MEDLINE/PubMed cross validation service, and Cytoscape visualization plugin. Three use cases demonstrate the functionality and usability of this portal.
Chen Bin
Ding Yanxia
Dong Xiao
Sankaranarayanan Madhuvanthi
Sun Yuyin
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