Bubble generation in a twisted and bent DNA-like model

Details Bubble generation in a twisted and bent DNA-like model Bubble generation in a twisted and bent DNA-like model

2004-08-31

arxiv.org/abs/nlin/0408061v1

Phys. Rev. E 70, 036609 (2004)

Nonlinear Sciences

Pattern Formation and Solitons

7 pages, 8 figures. Accepted for Phys. Rev. E (in press)

Scientific paper

10.1103/PhysRevE.70.036609

The DNA molecule is modeled by a parabola embedded chain with long-range interactions between twisted base pair dipoles. A mechanism for bubble generation is presented and investigated in two different configurations. Using random normally distributed initial conditions to simulate thermal fluctuations, a relationship between bubble generation, twist and curvature is established. An analytical approach supports the numerical results.

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