Autoregressive Modeling of Coding Sequence Lengths in Bacterial Genome

Details Autoregressive Modeling of Coding Sequence Lengths in Bacterial Genome Autoregressive Modeling of Coding Sequence Lengths in Bacterial Genome

2009-07-07

arxiv.org/abs/0907.1159v1

Biology

Quantitative Biology

Genomics

11 pages, 5 figures, 2 tables

Scientific paper

Previous investigation of coding sequence lengths (CDS) in the bacterial circular chromosome revealed short range correlation in the series of these data. We have further analyzed the averaged periodograms of these series and we found that the organization of CDS can be well described by first order autoregressive processes. This involves interaction between the neighboring terms. The autoregressive analysis may have great potential in modeling various physical and biological processes like light emission of galaxies, protein organization, cell flickering, cognitive processes and perhaps others.

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