A standalone version of IsoFinder for the computational prediction of isochores in genome sequences

Details A standalone version of IsoFinder for the computational prediction of isochores in genome sequences A standalone version of IsoFinder for the computational prediction of isochores in genome sequences

2008-06-07

arxiv.org/abs/0806.1292v1

Biology

Quantitative Biology

Genomics

7 pages, 3 figures

Scientific paper

Isochores are long genome segments relatively homogeneous in G+C. A heuristic algorithm based on entropic segmentation has been developed by our group, and a web server implementing all the required components is available. However, a researcher may want to perform batch processing of many sequences simultaneously in its local machine, instead of analyzing them on one by one basis through the web. To this end, standalone versions are required. We report here the implementation of two standalone programs, able to predict isochores at the sequence level: 1) a command-line version (IsoFinder) for Windows and Linux systems; and 2) a user-friendly version (IsoFinderWin) running under Windows.

Affiliated with

Also associated with

No associations

Rating

A standalone version of IsoFinder for the computational prediction of isochores in genome sequences does not yet have a rating. At this time, there are no reviews or comments for this scientific paper.

If you have personal experience with A standalone version of IsoFinder for the computational prediction of isochores in genome sequences, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and A standalone version of IsoFinder for the computational prediction of isochores in genome sequences will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFWR-SCP-O-11800