A self-organizing state-space-model approach for parameter estimation in Hodgkin-Huxley-type models of single neurons

Details A self-organizing state-space-model approach for parameter estimation in Hodgkin-Huxley-type models of single neurons A self-organizing state-space-model approach for parameter estimation in Hodgkin-Huxley-type models of single neurons

2011-06-21

arxiv.org/abs/1106.4317v2

Vavoulis DV, Straub VA, Aston JAD, Feng J (2012) A Self-Organizing State-Space-Model Approach for Parameter Estimation in Hodg

Biology

Quantitative Biology

Quantitative Methods

Scientific paper

10.1371/journal.pcbi.1002401

Traditionally, parameter estimation in biophysical neuron and neural network models usually adopts a global search algorithm, often combined with a local search method in order to minimize the value of a cost function, which measures the discrepancy between various features of the available experimental data and model output. In this study, we approach the problem of parameter estimation in conductance-based models of single neurons from a different perspective. By adopting a hidden-dynamical-systems formalism, we expressed parameter estimation as an inference problem in these systems, which can then be tackled using well-established statistical inference methods. The particular method we used was Kitagawa's self-organizing state-space model, which was applied on a number of Hodgkin-Huxley models using simulated or actual electrophysiological data. We showed that the algorithm can be used to estimate a large number of parameters, including maximal conductances, reversal potentials, kinetics of ionic currents and measurement noise, based on low-dimensional experimental data and sufficiently informative priors in the form of pre-defined constraints imposed on model parameters. The algorithm remained operational even when very noisy experimental data were used. Importantly, by combining the self-organizing state-space model with an adaptive sampling algorithm akin to the Covariance Matrix Adaptation Evolution Strategy we achieved a significant reduction in the variance of parameter estimates. The algorithm did not require the explicit formulation of a cost function and it was straightforward to apply on compartmental models and multiple data sets. Overall, the proposed methodology is particularly suitable for resolving high-dimensional inference problems based on noisy electrophysiological data and, therefore, a potentially useful tool in the construction of biophysical neuron models.

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