A Minimal OO Calculus for Modelling Biological Systems

Details A Minimal OO Calculus for Modelling Biological Systems A Minimal OO Calculus for Modelling Biological Systems

2011-09-07

arxiv.org/abs/1109.1366v1

EPTCS 67, 2011, pp. 50-64

Computer Science

Computational Engineering, Finance, and Science

In Proceedings CompMod 2011, arXiv:1109.1044

Scientific paper

10.4204/EPTCS.67.6

In this paper we present a minimal object oriented core calculus for modelling the biological notion of type that arises from biological ontologies in formalisms based on term rewriting. This calculus implements encapsulation, method invocation, subtyping and a simple formof overriding inheritance, and it is applicable to models designed in the most popular term-rewriting formalisms. The classes implemented in a formalism can be used in several models, like programming libraries.

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