A family tree of Markov models in systems biology

Details A family tree of Markov models in systems biology A family tree of Markov models in systems biology

2006-10-01

arxiv.org/abs/q-bio/0610003v4

IET Syst Biol. 1 (2007) 247-254

Biology

Quantitative Biology

Quantitative Methods

18 pages, 2 figures

Scientific paper

10.1049/iet-syb:20070017

Motivated by applications in systems biology, we seek a probabilistic framework based on Markov processes to represent intracellular processes. We review the formal relationships between different stochastic models referred to in the systems biology literature. As part of this review, we present a novel derivation of the differential Chapman-Kolmogorov equation for a general multidimensional Markov process made up of both continuous and jump processes. We start with the definition of a time-derivative for a probability density but place no restrictions on the probability distribution, in particular, we do not assume it to be confined to a region that has a surface (on which the probability is zero). In our derivation, the master equation gives the jump part of the Markov process while the Fokker-Planck equation gives the continuous part. We thereby sketch a {}``family tree'' for stochastic models in systems biology, providing explicit derivations of their formal relationship and clarifying assumptions involved.

Affiliated with

Also associated with

No associations

Rating

A family tree of Markov models in systems biology does not yet have a rating. At this time, there are no reviews or comments for this scientific paper.

If you have personal experience with A family tree of Markov models in systems biology, we encourage you to share that experience with our LandOfFree.com community. Your opinion is very important and A family tree of Markov models in systems biology will most certainly appreciate the feedback.

Rate now

Comments { 0 }

Profile ID: LFWR-SCP-O-176495